Zn-PI615697-REFERENCE-PanAnd-1.0 assembly and annotation
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This directory contains files for the PI 615697 accession of Zea nicaraguensis 
reference assembly.

This dataset contains both version 1 (Zn00001aa.1) and version 2 (Zn00001ab.1) 
annotations, with a cross-reference between the two.

The Helixer annotations were used in the gene model annotation process and 
should not be considered offical gene models.

Zn-PI615697-REFERENCE-PanAnd-1.0.fa.gz 
          - Assembly sequence
  
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001aa.1.gff3.gz
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001aa.1.cds.fa.gz
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001aa.1.gene.fa.gz
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001aa.1.protein.fa.gz
          - Version 1 gene model annotation position and sequence

Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001ab.1.gff3.gz
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001ab.1.cds.fa.gz
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001ab.1.gene.fa.gz
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001ab.1.protein.fa.gz
          - Version 2 gene model annotation position and sequence

Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001aa_Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001ab_xref.txt.gz
          - Cross reference between v1 and v2 gene models
          
Zn-PI615697-REFERENCE-PanAnd-1.0_EDTA.gff3.gz
          - Transposable elements, predicted by EDTA
          
Zn-PI615697-REFERENCE-PanAnd-1.0_Zn00001ab.1_entap_results.tsv
          - Predicted functional annotations for the gene models, calculated
            by EnTAP 2.0
  
Zn-PI615697-REFERENCE-PanAnd-1.0_helixer.gff3.gz
          - Helixer gene model predictions (not to be interpreted as official
            gene models)