Zv-TIL11-REFERENCE-PanAnd-1.0 assembly and annotation
===============================================================================
This directory contains files for the TIL11 accession of Zea mays - parviglumis
reference assembly.

This dataset contains both version 1 (Zv00002aa.1) and version 2 (Zv00002ab.1) 
annotations, with a cross-reference between the two.

The Helixer annotations were used in the gene model annotation process and 
should not be considered offical gene models.

Zv-TIL11-REFERENCE-PanAnd-1.0.fa.gz 
          - Assembly sequence
  
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002aa.1.gff3.gz
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002aa.1.cds.fa.gz
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002aa.1.gene.fa.gz
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002aa.1.protein.fa.gz
          - Version 1 gene model annotation position and sequence

Zv-TILTIL1101-REFERENCE-PanAnd-1.0_Zv00001ab.1.gff3.gz
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002ab.1.cds.fa.gz
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002ab.1.gene.fa.gz
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002ab.1.protein.fa.gz
          - Version 2 gene model annotation position and sequence

Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002aa_Zv-TIL01-REFERENCE-PanAnd-1.0_Zv00002ab_xref.txt.gz
          - Cross reference between v1 and v2 gene models
          
Zv-TIL11-REFERENCE-PanAnd-1.0_EDTA.gff3.gz
          - Transposable elements, predicted by EDTA
          
Zv-TIL11-REFERENCE-PanAnd-1.0_Zv00002ab.1_entap_results.tsv
          - Predicted functional annotations for the gene models, calculated
            by EnTAP 2.0
  
Zv-TIL11-REFERENCE-PanAnd-1.0_helixer.gff3.gz
          - Helixer gene model predictions (not to be interpreted as official
            gene models)