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IMPORTANT: Limited release.
Some data used in this analysis has been released under the Toronto agreement. 
Please do not publish results from this pan-Zea data until all underlying 
datasets have been published.
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Download files for the Zea mays pan-gene analysis.
Date: January 5, 2024
Software: Pandagma (https://github.com/legumeinfo/pandagma), downloaded January 4, 2024

Files:
pan-zea.v2.all_CDS.tar.gz
pan-zea.v2.all_proteins.tar.gz
  CDS and protein sequence for all gene models in each pan-gene.
  Each pan-gene is in a separate file.
pan-zea.v2.CDS.fa
pan-zea.v2.protein.fa
  CDS and protein sequence for exemplars* for each pan-gene
pan-zea.v2.CDS_alignments.tar.gz
pan-zea.v2.protein_alignments.tar.gz
  CDS and protein alignments.
pan-zea.v2.pandagma.conf
  Configuration file used to run Pandagma
pan-zea.v2.pan-genes_clust.tsv
  Each row lists all members of a pan-gene
pan-zea.v2.pan-genes_hash.tsv
  Each row lists a gene model and the pan-gene it belongs to
pan-zea.v2.pan-genes_table.tsv
  Table of gene models in each pan-gene by annotation
pan-zea.v2.stats.txt
  Statistics generated by Pandagma

*Exemplar gene models are selected by Pandagma to represent each pan-gene.