Download files for the Zea mays pan-gene analysis.
Date: August, 2025
Software: Pandagma (https://github.com/legumeinfo/pandagma), downloaded Aug 18, 2025

Files:
pan-zea.v3_X_v4.txt.gz
  Cross-reference between pan-gene analyses v3 and v4.
pan-zea.v4.all_CDS.tar.gz, an-zea.v4.all_proteins.tar.gz
  CDS and protein sequence for all gene models in each pan-gene.
  Each pan-gene is in a separate file.
pan-zea.v4.CDS.fa.gz, an-zea.v4.protein.fa.gz
  CDS and protein sequence for exemplars* for each pan-gene
pan-zea.v4.CDS_alignments.tar.gz, pan-zea.v4.protein_alignments.tar.gz
  CDS and protein alignments.
pan-zea.v4.pandagma.conf
  Configuration file used to run Pandagma
pan-zea.v4.pan-genes_clust.tsv.gz
  Each row lists all members of a pan-gene
pan-zea.v4.pan-genes_hash.tsv.gz
  Each row lists a gene model and the pan-gene it belongs to
pan-zea.v4.pan-genes_table.tsv.gz
  Table of gene models in each pan-gene by annotation
pan-zea.v4.stats.txt
  Statistics generated by Pandagma
pan-zea.v4.locus-synonyms.txt
  Table of locus and locus synonyms associated with pan-gene exemplars

*Exemplar gene models are selected by Pandagma to represent each pan-gene.