Tandem repeat analysis ====================== The gene model CDS transcript datasets for each genome were self-aligned using: blastn -perc_identity 95 -evalue 1e-10 -outfmt "6 std qlen slen qcovs". Gene models aligned to themselves were removed, and all remaining alignments that fell within a 300kb window of each other were selected, then run through the program MCL with the parameters -I 2.0 -te 20 --abc -o.