Assembly Zm-Mo17-REFERENCE-CAU-1.0

All files were obtained through Silong Sun of Jinshing Lai's lab in June 2018.
Original publication can be found here: https://doi.org/10.1038/s41588-018-0182-0

Some files were were edited by M Woodhouse of MaizeGDB to meet nomenclature 
standards (http://documents.maizegdb.org/nomenclature/maize_assembly_nomenclature_2016_update.pdf)

Files:
  Zm00014a.gff3.gz
    Zm-Mo17-REFERENCE-CAU-1.0.gff3 -> 
      Zm-Mo17-REFERENCE-CAU-1.0_mgdb.gff3 -> 
        Zm-Mo17-REFERENCE-CAU-1.0_Zm00014a.1.gff3.gz
    _Td and _Pd were changed to _Tddd and _Pddd respectively
  
  Zm00014a.CDS.fa.gz
    Zm-Mo17-REFERENCE-CAU-1.0_mgdb_cds.fa.gz ->
      Zm-Mo17-REFERENCE-CAU-1.0_Zm00014a.1.CDS.fa.gz
    CDS fasta file was generated by gffread using the Zm-Mo17-REFERENCE-CAU-1.0 genomic fasta file and gff3 file inputs
  
  Zm00014a.mrna.fa.gz
    Zm-Mo17-REFERENCE-CAU-1.0.mrna.fasta -> 
      Zm-Mo17-REFERENCE-CAU-1.0.mrna.mgdb.fasta -> 
        Zm-Mo17-REFERENCE-CAU-1.0_Zm00014a.1.mrna.fa.gz
    _Td was changed to _Pddd and renamed

  Zm00014a.proteins.fa.gz
    Zm-Mo17-REFERENCE-CAU-1.0.proteins.fasta -> 
      Zm-Mo17-REFERENCE-CAU-1.0.proteins.mgdb.fasta ->
        Zm-Mo17-REFERENCE-CAU-1.0_Zm00014a.1.proteins.fa.gz


All these original files are also available in CoGe 
(https://genomevolution.org/CoGe/GenomeInfo.pl?gid=51163) 
And CyVerse 
(genome assembly: https://de.cyverse.org/dl/d/9C4A7AD6-AEAE-4C8D-9DCC-138BD01AB925/Zm-Mo17-REFERENCE-CAU-1.0.fsa.gz
 annotation: https://de.cyverse.org/dl/d/F76F95A4-B2C5-4E5E-B15F-33FF3CDF6915/Zm-Mo17-REFERENCE-CAU-1.0.gff3)

The transcript fasta file is: 
https://de.cyverse.org/dl/d/C9AEC615-C572-4CE3-9FF7-0CC80BC844B6/Zm-Mo17-REFERENCE-CAU-1.0.mrna.fasta 
The protein fasta file is: 
https://de.cyverse.org/dl/d/B96D1CA3-380C-453A-A494-429C2FB80879/Zm-Mo17-REFERENCE-CAU-1.0.proteins.fasta 
The repeat gff file is: 
https://de.cyverse.org/dl/d/21AF2D71-BF08-4F8F-B640-758BAA9FE4D1/Zm-Mo17-REFERENCE-CAU-1.0.repeat.gff

The Mo17 genome sequences and gene annotations are available in NCBI by links: 
https://www.ncbi.nlm.nih.gov/nuccore/NCVQ00000000